Predicted Ribosome Binding Sites (RBS) in Intergenic Regions of 26 Conserved Operons
and Their Overlap with Motifs Predicted by AlignACE
Operon	Ribosome binding site	Ribosome binding site	Motif	Sequence	Motif start	Motif strand
	Pattern	Position			position	direction
17	AGGGG	1446
17	GGGGG	2127	1	CTTGGCTGGGGGTT	2121	-
188	GGGAG	291
188	GGGAG	1907
264	AGGAG
264	AGGAG	558
334	CGGAG	16
334	AGGGC	1609
334	CGGAG	2590
485	AGGAG	1621	17	TGTCGATACTCCTTGGTCG	1609	+
485	AGGAG	3144	7	ATCTCCTCAAAAAAAAA	3138	+
			13	GGAAATCTCCTCAAAAAAAAA	3134	+
			19	AAATCTCCTCAAAAAAAAACC	3136	+
498	GGGAG	287
498	GGGAG	1327
502	GGGGG
502	AGGAG	1183
674	AGGAG	476
674	AGGAA	953	7	AGAGGAATAATGCA	942	-
681	AGGAG	371	1	AGAGAAGAAGGAGCA	365	-
			2	GAAGAAGGAGCA	365	-
			3	GAGAAGAAGGAGCA	365	-
			4	AGAAGAAGGAG	367	-
			9	AAGAAGGAGC	366	-
			13	GAAGAAGGAGCAT	364	-
681	TGGAG	671
765	TGGAG	295	2	TTTCCTCCACAATGAAAAA	285	-
			3	TTTTTCATTGTGGAGGAAA	285	+
			7	AGGGGATTTTTCATTGTGGAG	279	+
765	TGGAG	1444
849	GGGAC	45
849	GGGAG	1228
849	GGGTG	1680
893	GGGAG	989
893	CGGTG	1967	4	ATCGCGGTGGACCGAA	1956	-
			7	GTCCACCGCGATACGG	1960	+
			8	TATCGCGGTGG	1962	-
991	AGGAG	1085
991	AGGAG	2463
1256	GGGAG	1412
1256	GTGAG	2128
1294	AGGAG	131
1294	AGGGG	1488
1410	AGGAG	1125
1410	AGGAG	1873
1410	TGGAG	3197	10	TCTCCATTGGGGTAGTGTTAATA	3192	+
			12	CAATGGAGAGA	3190	-
1483	GGGCG	1920
1483	GGTAG	2130	5	TCGCTGGCTACCTCG	2119	+
1538	GGCAG	914	4	ATCGGAAAGGCAGG	909	-
1538	ATGAG	1886	1	TGGCCAGCATGAGG	1881	-
			5	CTGGCCAGCATGA	1883	-
			10	GCATGAGGTC	1879	-
1581	AGGGG	1675
1581	AGGTG	3285
1816	GGGAG	950
1816	AGGAG	2278
1856	ACGAG	289	26	ACGAGGAACGAGACG	282	+
1856	CGGAG	1707
1900	CGGAG	33
1900	AGGAG	1878
1900	GGGAG	3993
2029	AGGAG	1939	3	CAAGGAGGATCA	1930	-
			4	ACAAGGAGGATCA	1930	-
			8	CAAGGAGGAT	1932	-
			15	AGCGGAACAAGGAGGATCACGCC	1926	-
2029	AGGAG	3009	1	AAGGAGGAAC	3001	-
			3	CAAGGAGGAACA	3000	-
			4	TCAAGGAGGAACA	3000	-
			5	TCCTTGAGTGGAAAAG	3006	+
			8	CAAGGAGGAA	3002	-
			10	TGACTTTTCCACTCAAGGAGG	3004	-
2097	AGGAG	608
2097	GGGAG	1321
2207	AGGAT	315	19	AATCCTTTGGACTATTGTTTGTT	310	+
2207	TGGAG	1169
2207	AGGAG	1479
2207	TGGAG	2096
2207	AGGAC	2753
2449	AGGAG	121
2449	AGGAG	376	3	AAGGAGACCAT	375	+
Note:
Operon, Operon number assigned by FGENESB;
Ribosome Binding Site, Ribosome binding site pattern predicted by RBSfinder;
Ribosome Binding Site Position, Position of the ribosome binding site predicted by RBSfinder;
Motif, motif number assigned by AlignACE. Shown are the motifs that overlap with predicted RBS by at least 4 out of 5 bp.
Motif sequence, sequence of a motif predicted by AlignACE. Location of the predicted RBS within each motif is shown in red.
Motif strand direction, indicates whether the motif is listed for a positive or negative strand of the G.sulfurreducens input sequence for this operon.
Motif start position, Location of the start of the motif in the G. sulfurreducens input sequence *.in.htm, where * is an operon number.