AlignACE 3.0 04/13/02
./AlignACE -expect 5 -gcback 0.61 -i 991.in
Parameter values:
expect = 5
gcback = 0.61
minpass = 200
seed = 1078878665
numcols = 10
undersample = 1
oversample = 1

Input sequences:
#0 991_Gsul, G.sulfurreducens sequence for operon 991

#1 991_Gmet, G.metallireducens sequence for operon 991 from contig 8

Motif 1
CGGCCACCAGG 0 264 0
CGGCAGCGACG 0 336 1
CGGCCACGACG 1 59 0
CGGCAACCAGG 1 161 0
CGGCAGCAAGG 1 218 1
CGGCGACGAGG 1 242 1
CGGCAACAATG 1 504 1
******* ***
MAP Score: 6.60247

Motif 2
TGGCTGGCGCTAACGA 0 153 1
TTGCCGTCCTGAAAGA 0 426 0
TTGCCGCCGTGAGGGA 1 166 1
TTGCTGCCGGGACCGA 1 211 0
TTGCCGACAAGACGGA 1 253 1
**** * * ** **
MAP Score: 5.48665

Motif 3
CGTCAGGAAGTAAAAAG 0 17 1
CCCTTCGAACAGTAAAG 0 52 0
CTCGGGGGAACGAAACG 0 128 1
CGTGACGAACCGGAAGG 0 181 0
CGCTGCGCACCGCATCG 0 291 0
CTTTCAGGACGGCAACG 0 427 1
CGCATCGAATCACAAAG 1 14 1
CGCCACGCCCGACAACG 1 134 1
CGTGAGGGAGGGGAACG 1 173 1
CGCCAAGTATTGAAACG 1 355 1
*** * * * ****
MAP Score: 5.10909

Motif 4
TTCCTGACGTG 0 15 0
CCACTGCCGGG 0 145 0
TCGCTGCCGTG 0 334 0
TTCCTGATGGG 0 364 1
TGGGTGATGTG 1 42 1
CTTCTGCCGTG 1 118 0
TTGCCGCCGTG 1 166 1
TTGCTGCCGGG 1 216 0
CGACTGCCGTG 1 480 1
TTAGTGACGGG 1 586 0
** ********
MAP Score: 2.76169

Motif 5
GATGGTGGAAA 0 252 0
GGTTGTGGAGA 0 492 0
GGTGGTGGGAA 0 530 0
GATGGTGTGGA 1 93 0
GGTTGTGGTGA 1 522 0
******** **
MAP Score: 1.5707

Motif 6
GTCAGGAAGTAAAAAGGCCCT 0 18 1
GGCTGGCGCTAACGATCTCCT 0 154 1
GGCCGGTTCGGCAAAGCTCGT 0 311 1
GGCGGGTGGTGGGAAGGTCGT 0 524 0
GTCGGGCGTGGCGAATTTCTT 1 126 0
GACGGACCGGGAAAAATTCCT 1 263 1
* * ** * ** ** *
MAP Score: 1.11616

Motif 7
GGTGATGGTGGAAATT 0 250 0
GGGAACGAGAGAGATT 1 183 1
GGTGATGGACGAAACT 1 417 0
GGTGACGCGTGACATT 1 511 0
*** * * ** ***
MAP Score: 0.758019

Motif 8
GGCGACTGCCACGTCAG 0 6 1
GCCGACAGCATGGCCAG 0 385 0
GGCGAGGGCGGCGGCAG 1 452 0
GCCGACTGCCGTGTCTG 1 478 1
CTCGATTGCCTGGACTG 1 550 1
* *** ** * ***
MAP Score: 0.328808

Motif 9
AAAGGCCCTGG 0 30 1
AACTTTCATGG 1 1 0
AAAGATCATGG 1 73 0
AAAATTCCTTG 1 275 1
AAACTCCATGG 1 323 1
AGCATTCATGG 1 344 0
*** *******
MAP Score: 0.0132882