AlignACE 3.0 04/13/02
./AlignACE -expect 5 -gcback 0.61 -i 765.in
Parameter values:
expect = 5
gcback = 0.61
minpass = 200
seed = 1078875362
numcols = 10
undersample = 1
oversample = 1

Input sequences:
#0 765_Gsul, G.sulfurreducens sequence for operon 765

#1 765_Gmet, G.metallireducens sequence for operon 765 from contig 1

Motif 1
AAAAAATAATCAAA 0 9 1
TAATGTCTATCAAA 0 34 1
GAAACGCCTTCAAA 0 67 0
GGAAACCTAAGAAA 0 293 1
GAAACGCAATGAAA 0 341 1
TGATCTTCAGCAAA 0 366 0
TAAAAGTAAACAAA 0 383 0
TACTTTCAAGGAAA 0 495 0
GACTCCTGACGAAA 1 159 1
GAATTTCATACAAT 1 254 1
TAAAGGCTTTCAAA 1 286 0
**** * * ****
MAP Score: 14.7325

Motif 2
TTTTACAAAAAATAATCAA 0 3 1
TTTGATAGACATTAGTAAA 0 29 0
TTTCCTCCACAATGAAAAA 0 279 0
TTGAGCTAAAAGTAAACAA 0 384 0
TTTCCTTGAAAGTACAGAG 0 495 1
*** * * ** * **
MAP Score: 5.96108

Motif 3
TTGATTATTTTTTGTAAAA 0 3 0
TTTACTAATGTCTATCAAA 0 29 1
TGCCCGAAACGCCTTCAAA 0 67 0
TTTTTCATTGTGGAGGAAA 0 279 1
ATAATGAAACGCAATGAAA 0 336 1
TGAGCTAAAAGTAAACAAA 0 383 0
TGGTAGATGGGGATGGAAA 1 183 1
TTCGATAAGCGATTTGAAA 1 274 1
** ** * ** ***
MAP Score: 5.3227

Motif 4
TTTTTACAAAAAATAA 0 2 1
TGTGGAGGAAACCTAA 0 287 1
AATGGAGGACATCTGA 0 305 1
TCAGCAAAAACCCTAA 0 358 0
AGTAAACAAAAACTGA 0 377 0
TTTCAAGGAAAGATCA 0 490 0
* * * **** ** *
MAP Score: 4.30733

Motif 5
ATAATCAAAATC 0 14 1
ATTAGTAAATCA 0 26 0
ATAAGTTAAGCC 0 114 0
ATAAGGAAGAGC 0 219 1
ATAATGAAACGC 0 336 1
AAAAGTAAACAA 0 384 0
ATGATTAAAGGA 0 459 0
********* *
MAP Score: 3.71545

Motif 6
GATTATTTTTTG 0 8 0
GATTTTTCATTG 0 277 1
GATCAGTTTTTG 0 375 1
GATCTTTCCTTG 0 491 1
GAATATTGTATG 1 260 0
******* ***
MAP Score: 3.62962

Motif 7
ATCTGATTTACTAATGTCTAT 0 23 1
AAGGTATCTTACGGTTTGAAG 0 53 1
AGGGGATTTTTCATTGTGGAG 0 273 1
AGGACATCTGACACGATGCAT 0 310 1
AAGCGATTTGAAAGCCTTTAG 1 280 1
* * **** * * **
MAP Score: 1.3451

Motif 8
GAAGGCGTTTCG 0 70 1
GAAGAGGATTCG 0 250 0
GAAGGGGATTTT 0 271 1
GAAAGGATTAGG 0 351 1
GAAAGGTAGAGG 1 169 1
GAAAGGAATATT 1 265 0
GAAAGCCTTTAG 1 289 1
****** *** *
MAP Score: 1.30296

Motif 9
AGGAAGAGCGT 0 222 1
AGGATTCGATT 0 247 0
ATGCATCGTGT 0 320 0
AGGATTAGGGT 0 354 1
ATGCAGCGGGT 0 469 1
ATGATGCGGGT 1 240 1
AGGAATATTGT 1 263 0
******** **
MAP Score: 0.974337

Motif 10
CACAACAGAA 0 101 1
CACAATGAAA 0 281 0
CGCAATGAAA 0 345 1
CACAACGACA 1 314 0
**********
MAP Score: 0.0687458