AlignACE 3.0 04/13/02
./AlignACE -expect 5 -gcback 0.61 -i 681.in
Parameter values:
expect = 5
gcback = 0.61
minpass = 200
seed = 1078874814
numcols = 10
undersample = 1
oversample = 1

Input sequences:
#0 681_Gsul, G.sulfurreducens sequence for operon 681

#1 681_Gmet, G.metallireducens sequence for operon 681 from contig 10

Motif 1
ACAGAACAATCCGCA 0 35 0
ACTGAAAAAGGAGCA 0 127 0
AATGGAGAAAAAGCG 0 150 0
AGAGAAGAAGGAGCA 0 209 0
GAGGAACAATGAACG 0 303 1
GCCGAAGAATCCACG 0 319 1
GGGGAAGAAACAGCA 0 335 1
GCGGCAGAAAGCGCA 0 442 0
ACGGCACAATCCACA 1 295 1
* *** ** ****
MAP Score: 12.4502

Motif 2
GAAGAAGGAGCA 0 209 0
AAAGGAGGAACA 0 299 1
AAAGGAGCATCA 0 124 0
GAAGAAACAGCA 0 338 1
GAAGGAGGAAGA 1 13 1
GCAGCAGCACCA 1 234 0
ACAAAAGCACCA 1 84 1
**** **** **
MAP Score: 7.22574

Motif 3
GCGGAGAAAGGGCC 0 59 0
CTGAAAAAGGAGCA 0 127 0
GAGAAAAAGCGACC 0 147 0
GAGAAGAAGGAGCA 0 209 0
CGGCAAAAGCCTCC 0 255 0
GGGAAGAAACAGCA 0 336 1
CGGCAGAAAGCGCA 0 442 0
CCGCAGCAGCACCA 1 234 0
GCGGAGAAACGTCC 1 330 0
* * ****** **
MAP Score: 5.95878

Motif 4
ACAAAACGGAG 0 12 0
TGAAAAAGGAG 0 129 0
AGAAAATGGAG 0 158 0
AGAAGAAGGAG 0 211 0
TGAAACAGGGG 0 227 0
AGAAACAGCAG 0 340 1
TGAACATGGGG 1 411 1
****** ****
MAP Score: 5.45808

Motif 5
ACGGAGTGAG 0 8 0
GCGGAGAAAG 0 63 0
ACTGAAAAAG 0 132 0
ACGGAGAAAA 0 163 0
GCGGAGAGAA 0 218 0
AAGGAGGAAC 0 300 1
ACGGAGCGAG 0 529 1
AAGGAGGAAG 1 14 1
GAGGAGGAAA 1 66 1
GCGGAGAAAC 1 334 0
GCGGAAGGAG 1 433 0
**********
MAP Score: 4.40061

Motif 6
CAGCACAAAACG 0 15 0
CAGAACAATCCG 0 37 0
CGGCAAAAGCCT 0 257 0
CCGAAGAATCCA 0 320 1
CGGCAACAAACT 0 366 0
CAGCAGAAGTCA 0 418 0
CGGCAGAAAGCG 0 444 0
CGGCAAAAGGGA 0 461 1
CGGCATCAGGCA 1 253 1
CGGCACAATCCA 1 296 1
CGGAAGGAGGCG 1 430 0
***** *** **
MAP Score: 3.55304

Motif 7
CGGAGAAAATGGAG 0 158 0
CGGCGGAAATAGTG 0 430 1
TGCTGGAAATTGAG 0 492 1
CGGTGTAGATCGTG 1 187 0
TGGAGGAATTCGTG 1 222 1
CGGTGAACATGGGG 1 408 1
*** * **** * *
MAP Score: 2.95597

Motif 8
TTTGCCGGCTG 0 262 1
TTTGCCGGCAG 0 457 0
TGTGCCCGCAG 1 242 0
TGTGCCGTGAG 1 292 0
TGTGCCGGTAG 1 358 0
******** **
MAP Score: 2.90314

Motif 9
GAGAAAGGGC 0 60 0
AAAAAGGAGC 0 128 0
AAGAAGGAGC 0 210 0
ATGAACGAGC 0 311 1
AAGAAACAGC 0 339 1
AGGAAACGGT 1 0 1
AGGAAACAGC 1 70 1
ATGAAGGAGC 1 368 1
**********
MAP Score: 2.50772

Motif 10
CCTGTTTCACGTGGCCGGCGGA 0 229 1
CATCGGCGAGTTTGTTGCCGAG 0 358 1
CGTGCTGGAAATTGAGGCTGCG 0 490 1
CCTGGTAGAGTTCGGCGCTCAG 1 152 0
CCTGGAGGAATTCGTGGTGCTG 1 220 1
CATCAGGCAGCTTGTGGATGTG 1 256 1
CATGAAGGAGCTGGGAGGGCTG 1 367 1
* ** ** * * * * *
MAP Score: 2.4186

Motif 11
GGGTTGGACGCGGAG 0 67 0
GAGTTTGTTGCCGAG 0 365 1
GTTGTCGACGCAGAG 1 129 0
GAGTTCGGCGCTCAG 1 152 0
GCATTCGACGCGCAG 1 205 1
* ** * *** ***
MAP Score: 0.885812

Motif 12
TCATCCGGAGGTGGTG 0 106 0
TGAACGGGAGATTGCG 0 188 0
TGCGGCGGAAATAGTG 0 428 1
TCAGTCGGGAATGTTG 1 140 0
TGAGCGGGGTATCGTG 1 280 0
TGAACTGTGGATTGTG 1 299 0
TCCCTAGGGTGTCGCG 1 317 0
TGAACATGGGGTGGCG 1 411 1
* * *** ** ***
MAP Score: 0.559726

Motif 13
GGACGCGGAGAAA 0 64 0
GAAAAAGGAGCAT 0 126 0
GAAAATGGAGAAA 0 155 0
GGTGCAGGCGCAA 0 180 1
GAAGAAGGAGCAT 0 208 0
GGTTGCGGAGAAA 1 335 0
*** *******
MAP Score: 0.385986

Motif 14
GGAGCATCACGTCATCCGGAGGTGGTG 0 106 0
GGAGCATGTGCTGAACGGGAGATTGCG 0 188 0
GGCTCGTTCATTGTTCCTCCTTTCGAG 0 295 0
GGATTGTGCCGTGAGCGGGGTATCGTG 1 280 0
GGCCGATTCGGTGAACATGGGGTGGCG 1 400 1
** * * * * * * * *
MAP Score: 0.266851