AlignACE 3.0 04/13/02
./AlignACE -expect 5 -gcback 0.61 -i 498.in
Parameter values:
expect = 5
gcback = 0.61
minpass = 200
seed = 1078871214
numcols = 10
undersample = 1
oversample = 1

Input sequences:
#0 498_Gsul, G.sulfurreducens sequence for operon 498

#1 498_Gmet, G.metallireducens sequence for operon 498 from contig 5

Motif 1
TGCGGGAGGTGGGACTGGA 0 53 1
TGGCGCTGGTCATGGACCA 0 74 1
CCGTGGTGTCCATTCCCCA 0 125 1
TGCAGGAGTTCTTCCCGCA 0 203 0
TGCAGAAGTTCCGAAGCCA 0 230 0
TCAGGATGTTCCTCCCTGA 0 284 0
TCGGGCTGTTCTTTCGTCA 1 30 1
CGTTGCTGGTGATATCGAA 1 73 1
TCATGATGTCGAGATCATA 1 109 1
TGCCGATGTTGCGCGGATA 1 171 1
TTCTGCAGTTCCTTCACCA 1 222 1
TGGCGGAGTTGCTGCTGCA 1 322 0
** * ***** * *
MAP Score: 13.3212

Motif 2
GGTGGACGAGGTGGCGGAGATC 0 18 1
GGTCCATGACCAGCGCCAGCTC 0 70 0
GGCGACCGACGGACGCGAGTTC 0 93 1
GGGCAACCACCATATCGTCATC 0 156 1
GACGAAAGAACAGCCCGATATC 1 26 0
GGGGCAGGACCTCTTCGATATC 1 83 0
GCCCGAGTATGATCTCGACATC 1 113 0
GCTCGATCAGGTGCTCCAACTC 1 146 0
GCAGAAGCAAGCCGGACAGTTC 1 206 0
GCTGCAAAAGGGTTACGAAGTC 1 306 0
* * * * * *** **
MAP Score: 11.6096

Motif 3
GCTGGTCATGGACCAG 0 78 1
GCGAGTTCTTCGGCAA 0 107 1
GGAGTTCTTCCCGCAA 0 202 0
GGAACTTCTGCACCAA 0 237 1
GGGGAAACTCAGTCAA 0 268 1
GCTGTTCTTTCGTCAA 1 34 1
GCAGATGCTCGATCAG 1 158 0
GCAGTTCCTTCACCAA 1 226 1
GGAGTTGCTGCTGCAA 1 321 0
GCTGGTTCTGAAGCAG 1 414 1
**** * ** ***
MAP Score: 9.29871

Motif 4
AGCTGGCGCTGGTCATGGACCAGG 0 71 1
TGCAGGAGTTCTTCCCGCAATGCC 0 198 0
TCGCCGGCTTGGTGCAGAAGTTCC 0 237 0
TGAAGCCTGTCTTGACGAAAGAAC 1 37 0
TGGAGCACCTGATCGAGCATCTGC 1 150 1
TGTCCGGCTTGCTTCTGCAGTTCC 1 210 1
TGGCGCCGTTGGTGAAGGAACTGC 1 226 0
TGGCGGAGTTGCTGCTGCAAAAGG 1 317 0
AGGTGGCTCTGCTTCAGAACCAGC 1 414 0
** ** ** * * * *
MAP Score: 8.02273

Motif 5
GTCGCTGCGGGAGGTGGGACTGGA 0 48 1
GCTGGTCATGGACCAGGCGACCGA 0 78 1
GGCATTGCGGGAAGAACTCCTGCA 0 198 1
GGAACTTCTGCACCAAGCCGGCGA 0 237 1
GTCAATCAGGGAGGAACATCCTGA 0 279 1
GCAGATGCTCGATCAGGTGCTCCA 1 150 0
GGAACTGCAGAAGCAAGCCGGACA 1 210 0
GTTGCTGCTGCAAAAGGGTTACGA 1 310 0
* * * * * * ** **
MAP Score: 3.72514

Motif 6
TGCCGAAGAAC 0 111 0
TTCCGAAGCCA 0 230 0
TTCTGCACCAA 0 242 1
TGCAGAAGCAA 1 218 0
TTCCGAACACA 1 271 1
TGCAGCAGCAA 1 322 1
TTCAGAACCAG 1 415 0
*** *******
MAP Score: 3.30401

Motif 7
GGTGATGACGATATGGTGGTT 0 160 0
GGTGAAAAACATCGCCCGGTT 0 313 1
GAACAGCCCGATATCCTGCTT 1 20 0
GTTCAAGACCATAGTCTGTGT 1 189 0
GCTAAATTGAATGTAATGTTT 1 281 0
* * * ** * ** **
MAP Score: 1.65729

Motif 8
ACCATATCGTCATCA 0 164 1
AACAGCCCGATATCC 1 25 0
ACCTCTTCGATATCA 1 82 0
ATGATGTCGAGATCA 1 111 1
AACTCTTTGACATCA 1 136 0
* ** * ** ****
MAP Score: 1.06145

Motif 9
TGCCGAAGAA 0 112 0
TGGTGCAGAA 0 242 0
CGGTGAAAAA 0 312 1
TGGACAAGCA 1 15 1
TGCAGAAGCA 1 219 0
TGGTGAAGGA 1 231 0
TGCTGCAAAA 1 319 0
TTCTGAAGCA 1 419 1
**********
MAP Score: 1.01242

Motif 10
CGATATGGTGGT 0 161 0
GAACGTGGTGAT 0 175 0
GAACATCCTGAT 0 292 1
CGATATCCTGCT 1 21 0
CAACGTGCTCCT 1 66 0
CGACATCATGAA 1 108 0
GAATGTAATGTT 1 282 0
CAATGTATTGAA 1 403 0
******* ** *
MAP Score: 0.729327