FN ISI Export Format
VR 1.0
FN ISI Export Format
VR 1.0
PT J
AU Qu, YH
   Brown, P
   Barbe, JF
   Puljic, M
   Merino, E
   Adkins, RM
   Lovley, DR
   Krushkal, J
AF Qu, Yanhua
   Brown, Peter
   Barbe, Jose F.
   Puljic, Marko
   Merino, Enrique
   Adkins, Ronald M.
   Lovley, Derek R.
   Krushkal, Julia
TI GSEL Version 2, an Online Genome-Wide Query System of Operon
   Organization and Regulatory Sequence Elements of Geobacter
   sulfurreducens
SO OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
LA English
DT Article
ID URANIUM-CONTAMINATED AQUIFER; ESCHERICHIA-COLI K-12; FE(III) REDUCTION;
   COMMUNITY STRUCTURE; ELECTRON-TRANSFER; METAL REDUCTION;
   GENE-REGULATION; COG DATABASE; DNA; TRANSCRIPTION
AB Geobacter sulfurreducens is a model organism within the
   delta-Proteobacterial family Geobacteraceae, members of which can
   participate in environmental bioremediation of metal and organic waste
   contaminants and in production of bioenergy. In this report, we
   describe a new, significantly expanded and updated, version 2 of the
   GSEL (Geobacter Sequence Elements) database
   (http://geobacter.org/research/gsel2/ and
   http://geobacter.org/refs/gsel2/) and its accompanying online query
   system, which compiles information on operon organization and
   regulatory sequence elements in the genome of G. sulfurreducens. It
   incorporates a new online graphical browser, provides novel search
   capabilities, and includes updated operon predictions along with new
   information on predicted and experimentally validated genome regulatory
   sites. The GSEL database and online search system provides a unique and
   comprehensive tool cataloging information about gene regulation in G.
   sulfurreducens, aiding in investigation of mechanisms that regulate its
   ability to generate electric power, bioremediate environmental waste,
   and adapt to environmental changes.
C1 [Qu, Yanhua; Barbe, Jose F.; Puljic, Marko; Krushkal, Julia] Univ Tennessee, Hlth Sci Ctr, Dept Prevent Med, Memphis, TN 38163 USA.
   [Brown, Peter; Lovley, Derek R.] Univ Massachusetts, Dept Microbiol, Amherst, MA 01003 USA.
   [Puljic, Marko] Univ Memphis, Dept Math Sci, Memphis, TN 38152 USA.
   [Merino, Enrique] Univ Tennessee, Hlth Sci Ctr, Dept Pediat, Memphis, TN 38163 USA.
RP Krushkal, J, Univ Tennessee, Hlth Sci Ctr, Dept Prevent Med, 66 N
   Pauline,Ste 633, Memphis, TN 38163 USA.
EM jkrushka@utmem.edu
FU Office of Science (BER) ; U. S. Department of Energy [DE-FC02-02ER63446]
FX This research was supported by the Office of Science (BER), U. S.
   Department of Energy, Grant No. DE-FC02-02ER63446. We thank two
   anonymous reviewers and Dr. E. Kolker, the editor of OMICS, for helpful
   comments and suggestions. We are grateful to Drs. V. Solovyev
   (Softberry, Inc) and A. Salamov (Lawrence Berkeley National Laboratory)
   for information about algorithms implemented in the FGENESB software
   and for helpful discussions. We also thank J. Peeples (the University
   of Tennessee Health Science Center) for editorial assistance.
NR 50
TC 0
PU MARY ANN LIEBERT INC
PI NEW ROCHELLE
PA 140 HUGUENOT STREET, 3RD FL, NEW ROCHELLE, NY 10801 USA
SN 1536-2310
J9 OMICS
JI OMICS
PD OCT
PY 2009
VL 13
IS 5
BP 439
EP 449
DI 10.1089/omi.2009.0081
PG 11
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA 500TO
UT ISI:000270328100008
ER

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